{ "_id": "6a27c9e224555f66ed5416d6", "Package": "ILSM", "Title": "Analyze Interconnection Structure of Tripartite Interaction\nNetworks", "Version": "1.1.0.1", "Authors@R": "c(\nperson(\"Weicheng\", \"Sun\", , \"sunwch2023@lzu.edu.cn\", role = c(\"aut\", \"cre\")),\nperson(\"Chuan\", \"Yan\", , \"yanchuan@lzu.edu.cn\", role = c(\"aut\")),\nperson(\"Yangyang\", \"Zhao\", , \"120220907711@lzu.edu.cn\", role = c(\"aut\")))", "Description": "In view of the analysis of the structural characteristics\nof the tripartite network has been complete, however, there is\nstill a lack of a unified operation that can quickly obtain the\ncorresponding characteristics of the tripartite network. To\nsolve this insufficiency, 'ILSM' was designed for supporting\ncalculating such metrics of tripartite networks by functions of\nthis R package.", "License": "MIT + file LICENSE", "URL": "https://github.com/WeichengSun/ILSM", "BugReports": "https://github.com/WeichengSun/ILSM/issues", "Encoding": "UTF-8", "Roxygen": "list (markdown = TRUE, roclets = c (\"namespace\", \"rd\",\n\"srr::srr_stats_roclet\"))", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://weichengsun.r-universe.dev", "Date/Publication": "2025-09-12 07:29:50 UTC", "RemoteUrl": "https://github.com/weichengsun/ilsm", "RemoteRef": "HEAD", "RemoteSha": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-09 07:48:31 UTC", "User": "root" }, "Author": "Weicheng Sun [aut, cre],\nChuan Yan [aut],\nYangyang Zhao [aut]", "Maintainer": "Weicheng Sun ", "MD5sum": "346f9de942ec840d66c8afea1892c269", "_user": "weichengsun", "_type": "src", "_file": "ILSM_1.1.0.1.tar.gz", "_fileid": "16a7c5fd9ff52a0af17b76316d5efafcc31aeb86085b7c3ab09288cddd9add74", "_filesize": 11540637, "_sha256": "16a7c5fd9ff52a0af17b76316d5efafcc31aeb86085b7c3ab09288cddd9add74", "_created": "2026-06-09T07:48:31.000Z", "_published": "2026-06-09T08:08:02.341Z", "_distro": "noble", "_jobs": [ { "job": 80273565374, "time": 158, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7501628112" }, { "job": 80273565382, "time": 163, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7501629611" }, { "job": 80273565404, "time": 134, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7501947012" }, { "job": 80273565392, "time": 152, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7501700607" }, { "job": 80273089724, "time": 183, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7501572712" }, { "job": 80273565365, "time": 113, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7501612378" }, { "job": 80273565393, "time": 117, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7501613996" }, { "job": 80273565522, "time": 111, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7501611484" }, { "job": 80273565391, "time": 112, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7501612199" } ], "_buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/weichengsun/ilsm", "_commit": { "id": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "author": "SunWeicheng <1873179705@qq.com>", "committer": "SunWeicheng <1873179705@qq.com>", "message": "Update tri_null.Rd\n", "time": 1757662190 }, "_maintainer": { "name": "Weicheng Sun", "email": "sunwch2023@lzu.edu.cn" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "weichengsun", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-24", "n": 10 }, { "week": "2025-33", "n": 3 }, { "week": "2025-37", "n": 2 } ], "_tags": [], "_stars": 6, "_contributors": [ { "user": "weichengsun", "count": 390, "uuid": 104892261 }, { "user": "yanriver", "count": 74, "uuid": 12986102 } ], "_userbio": { "uuid": 104892261, "type": "user", "name": "SunWeicheng" }, "_downloads": { "count": 153, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ILSM" }, "_devurl": "https://github.com/weichengsun/ilsm", "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ILSM.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/weichengsun/ilsm", "_realowner": "weichengsun", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2024-03-28" }, { "version": "1.0.2", "date": "2024-04-07" }, { "version": "1.0.3.1", "date": "2024-07-25" }, { "version": "1.0.3.2", "date": "2024-09-04" }, { "version": "1.1.0.1", "date": "2025-08-01" } ], "_exports": [ "build_toy_net", "coid", "cois", "hc", "icmotif_count", "icmotif_role", "ig_ddom", "ig_icmotif_count", "ig_icmotif_role", "ig_overlap_guild", "Multi_motif", "node_icc", "pc", "poc", "role_sim", "tri_null", "trigraph_from_mat" ], "_datasets": [ { "name": "HP", "title": "", "object": "HP", "file": "HP.csv.gz", "class": [ "data.frame" ], "fields": [ "X.he_Agromyziidae.grass.sp.2.he_Agromyziidae.grass.sp.3.he_Agromyziidae.grass.sp.1.he_Hydrellia.maura.he_Chromatomyia.nigra.he_Chromatomyia.milli.he_Agromyziidae.grass.sp.4.he_Agromyziidae.grass.sp.5.he_Lyriomyza.flaveola.he_Chlorops.hypostigma.he_Agromyza.nigripes.he_Cerodonta.muscina.he_Cerodonta.denticornis.he_Cerodontha.fulvipes.he_Elaschita.sp..he_Phytomyza.ranunculi.he_Scaptomyza.flava.he_Scaptomyza.graminum.he_Phytomyza.leucanthemi.he_Chromatomya.horticula.syngenesiae.he_Bucculatrix.nigricomella.he_Chromatomyia.paracillata.he_Phytomyza.fallaciosa.he_Phytomyza.plantaginis.he_Phytomyza.ranunculivora.he_Phytomyza.stolonifera.he_Phytomyza.notata.he_Agromyzae.sp.1.he_Pegomyia.solennis.he_Lriomyza.taraxaci.he_Agromyza.nana.he_Phytomyza.crassiseta" ], "rows": 31, "table": true, "tojson": true }, { "name": "PHP_Network", "title": "", "object": "PHP_Network", "file": "PHP_Network.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "PP", "title": "", "object": "PP", "file": "PP.csv.gz", "class": [ "data.frame" ], "fields": [ "X.po_Mallochohelea.sp..po_Opomyza.petrei.po_Pegoplata.aestiva.po_Scathophaga.stercoraria.po_Platycheirus.albimanus.po_Empis.femorata.po_Eristalis.tenax.po_Phaonia.incana.po_Drymeia.brumalis.po_Platycheirus.manicatus.po_Fannia.sp..po_Lepidoptera.sp..po_Empis.livida.po_Bombus.pascuorum.po_Bombus.lucorum.po_Volucella.bombylans.po_Diptera.sp..po_Meligethes.aff..aeneus.po_Stymphoromyia.crassicornis.po_Thricops.longipes.po_Chlorops.hypostigma.po_Empis.digramma.po_Phaonia.serva.po_Thricops.sp..po_Drymeia.hastata.po_Dilophus.femoratus.po_Cheilosia.albitarsis.ranunculi.po_Myospila.meditabunda.po_Hylemya.variata.po_Scathophagidae.sp..po_Bombus.terrestris.po_Lotophila.atra.po_Neomyia.cornicina.po_Empis.punctata.po_Hilara.sp..po_Bicellaria.sulcata.po_Cicadellidae.sp..po_Phaonia.sp..po_Calliphora.vomitoria.po_Lucilia.caesar.po_Hydrellia.sp..po_Bicellaria.sp..po_Eupeodes.corollae.po_Pegoplata.infirma.po_Tenthredo.arcuata.po_Coenosia.pedella.po_Botanophila.brunneilinea.po_Delia.sp..po_Scaptomyza.flava.po_Eupeodes.sp..po_Delia.platura.po_Themira.lucida.po_Eristalis.horticola.po_Syritta.pipiens.po_Botanophila.striolata.po_Syrphus.vitripennis.po_Helina.sp..po_Fannia.umbratica.po_Botanophila.sp..po_Agriphilla.tristella.po_Dolichopus.plumipes.po_Haematopota.pluvialis.po_Miridae.sp..po_Thricops.nigritellus.po_Chamaemyia.herbarum.po_Lejogaster.metallina.po_Dialineura.anilis.po_Ceratopogonidae.sp..po_Chlorops.serenus.po_Hydrellia.maura.po_Thyripticus.sp..po_Fannia.rondanii.po_Cheilosia.antiqua.po_Platycheirus.clypeatus.po_Opomyza.germinationis.po_Ichneumonidae.sp..1.po_Chlorops.meigenii.po_Hybos.femoratus.po_Chrysotus.sp..po_Chrysogaster.virescens.po_Tachinidae.sp..po_Melanomya.nana.po_Phytomyza.aff..fallaciosa.po_Helina.subvittata.po_Melanostoma.mellinum.po_Dascillus.ceruinus.po_Hydrotaea.irritans.po_Geomyza.tripunctata.po_Sphaerophoria.sp..po_Bombus.pratorum.po_Bombus.hortorum.po_Ctenicera.cuprea.po_Psyche.casta" ], "rows": 31, "table": true, "tojson": true }, { "name": "PPH_Coltparkmeadow", "title": "An empirical tripartite pollinator-plant-herbivore network", "object": "PPH_Coltparkmeadow", "file": "PPH_Coltparkmeadow.rda", "class": [ "igraph" ], "fields": [], "table": false, "tojson": false }, { "name": "PPH_Network", "title": "", "object": "PPH_Network", "file": "PPH_Network.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "build_toy_net", "title": "Generating an example tripartite network randomly", "topics": [ "build_toy_net" ] }, { "page": "coid", "title": "Correlation of degree of connector nodes", "topics": [ "coid" ] }, { "page": "cois", "title": "Correlation of Interaction Similarity for connector nodes", "topics": [ "cois" ] }, { "page": "hc", "title": "The proportion of hub connectors in the shared sets of nodes", "topics": [ "hc" ] }, { "page": "icmotif_count", "title": "Count interconnection motifs", "topics": [ "icmotif_count" ] }, { "page": "icmotif_role", "title": "Count the roles of connector nodes defined by interconnection motifs", "topics": [ "icmotif_role" ] }, { "page": "ig_ddom", "title": "Degree of diagonal dominance", "topics": [ "ig_ddom" ] }, { "page": "ig_icmotif_count", "title": "Count interconnection motifs for tripartite networks with intra-guild interactions", "topics": [ "ig_icmotif_count" ] }, { "page": "ig_icmotif_role", "title": "Count the roles of connector nodes defined by interconnection motifs with intra-guild interactions", "topics": [ "ig_icmotif_role" ] }, { "page": "ig_overlap_guild", "title": "Intra-guild and inter_guild interaction overlap", "topics": [ "ig_overlap_guild" ] }, { "page": "Multi_motif", "title": "Interconnection motif forms", "topics": [ "Multi_motif" ] }, { "page": "node_icc", "title": "Interconnection centrality for connector nodes in a tripartite network", "topics": [ "node_icc" ] }, { "page": "pc", "title": "Participation coefficient", "topics": [ "pc" ] }, { "page": "poc", "title": "Proportion of connector nodes", "topics": [ "poc" ] }, { "page": "PPH_Coltparkmeadow", "title": "An empirical tripartite pollinator-plant-herbivore network", "topics": [ "PPH_Coltparkmeadow" ] }, { "page": "role_sim", "title": "Similarity of roles of interconnecting species", "topics": [ "role_sim" ] }, { "page": "tri_null", "title": "Generates null models for tripartite network", "topics": [ "tri_null" ] }, { "page": "trigraph_from_mat", "title": "Transforming two matrices into an igraph object.", "topics": [ "trigraph_from_mat" ] } ], "_readme": "https://github.com/weichengsun/ilsm/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "glue", "igraph", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "rlang", "vctrs" ], "_vignettes": [ { "source": "Guildlines_and_application_examples.Rmd", "filename": "Guildlines_and_application_examples.html", "title": "Guildlines and application examples", "engine": "knitr::rmarkdown", "headings": [ "ILSM: A package for analyzing the interconnection structure of tripartite interaction networks (updating)", "Installation", "A common tripartite interaction network in this package", "A worked example of analyzing interconnection structures", "Interconnection pattern", "Interconnection motif", "Interconnection centrality", "Extensional analysis", "Null models", "For tripartite networks with intra-guild interactions", "Interconnection motifs with intra-guild interactions", "Degree of diagonal dominance", "Species-level intra-guild and inter-guild interaction overlap", "Comparison among interconnection patterns, centralities and motifs", "Comparison of interconnection motifs between PHP and PPH networks", "License", "References", "Citation" ], "created": "2025-05-29 08:51:47", "modified": "2025-06-07 10:02:06", "commits": 14 } ], "_score": 4.954242509439325, "_indexed": true, "_nocasepkg": "ilsm", "_universes": [ "weichengsun" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0.1", "date": "2026-06-09T07:50:48.000Z", "distro": "noble", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "b87f1d58542c9520e0054fbf446c43f69a8bb5d1126e995ca7bc73da89e09c7f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0.1", "date": "2026-06-09T07:50:51.000Z", "distro": "noble", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "908bfd67f76887abee1ee9b623300d18dd1134d79ae81c8022451c4a0104cefc", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0.1", "date": "2026-06-09T08:07:04.000Z", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "63392c83aed58e5431469da46cdef0caa48f2bfb8ea4fc34b2bbeafe90c9a0c4", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0.1", "date": "2026-06-09T07:54:37.000Z", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "633f1f115569c269b0ac90d613b0c0e132db67106aacb2798bea0e37284e56ae", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0.1", "date": "2026-06-09T07:50:50.000Z", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "0b3b5c094c9748c4841fe747962e89ac871e18ab36beb4cd08d91c03eaf4dd87", "status": "success", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.7.0", "os": "win", "version": "1.1.0.1", "date": "2026-06-09T07:49:56.000Z", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "4a836e57ae86f884e46fe4fe2d8c9542bc9d229ee657fe17f7c6e2e2e01c0ece", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.5.3", "os": "win", "version": "1.1.0.1", "date": "2026-06-09T07:49:49.000Z", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "69634e0d1422f67e54108cb3e7763df9bc84dcde3d96899490c6a7f17a142580", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" }, { "r": "4.6.0", "os": "win", "version": "1.1.0.1", "date": "2026-06-09T07:49:48.000Z", "commit": "0d7b82d73857fa46d1be1acdcbd29964605ef33a", "fileid": "06f324c03effbdbf3238332061223a88f05a49d0782127ee8f58823d9507c26c", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/weichengsun/actions/runs/27191637887" } ] }